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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PSSA.1
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Download FASTA
Download metadata TSV
Display Name: Georgia/LOC_000PSSA.1/2023
L. S. Karan,
N. E. Perekopskaya,
E. S. Morozkin &
G. V. Roev
Sample details
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2024-02-10
Collection country
Georgia
Isolate name
GE/Ser-H/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-29 08:12
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Central Research Institute of Epidemiology, Department of Molecular Diagnostic and Epidemiology
INSDC
NCBI release date
2024-02-10
INSDC accession L
PP116320.1
INSDC accession M
PP116319.1
INSDC accession S
PP116318.1
Bioproject accession
PRJNA1063190
Biosample accession
SAMN39328239
Raw reads accession
SRR27477368
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12124
Total SNPs L
1323
Total inserted nucs L
34
Total deleted nucs L
2
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.87%
Alignment and QC metrics M
Length M
5342
Total SNPs M
1050
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.59%
Alignment and QC metrics S
Length S
1658
Total SNPs S
265
Total inserted nucs S
2
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.04%
Submission details
Submission ID
PP116320.1.L/PP116319.1.M/PP116318.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-29 08:12:10 UTC
Date released
2025-09-29 08:17:25 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000PSSA.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
A
42
T
L:
G
43
C
L:
T
47
G
L:
T
49
C
L:
A
53
G
L:
T
58
C
L:
C
59
T
L:
C
63
G
L:
C
64
G
L:
T
66
C
L:
A
72
G
L:
A
73
C
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
G
62
C
M:
T
65
C
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
T
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
G
76
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
Show more
Deletions
L:12093, L:12094, M:321-323
Insertions
ins_L:67:C, ins_L:11924:G, ins_L:12108:TTCATTATTTGCAGGGTGTGGGGGGAACGATT, ins_M:5171:T, ins_S:1577:A, ins_S:1672:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
Q
13
R
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
T
32
K
GPC:
D
33
N
GPC:
T
34
N
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
I
277
T
NP:
S
301
G
NP:
A
307
P
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
K
91
E
RdRp:
R
156
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
T
215
I
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC:77
Insertions
None
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