This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MBBS.1

Display Name: Austria/LOC_000MBBS.1/2024-09-13
D. M. Florian, S. W. Aberle & J. V. Camp

Sample details

Collection date
2024-09-13
Collection date (lower bound)
2024-09-13
Collection date (upper bound)
2024-09-13
Earliest release date
2025-01-08
Collection country
Austria
Isolate name
Austria/MUW1754593/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-29 08:09insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Medical University of Vienna, Center for Virology

INSDC

NCBI release date
2025-01-08
NCBI update date
2025-01-08
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
1465
Total SNPs
289
Total inserted nucs
24
Total deleted nucs
25
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
13.29%
Total stop codons
0

Submission details

Submission ID
PQ785893.1
Submitting group
Date submitted
2025-09-29 08:09:55 UTC
Date released
2025-09-29 08:26:33 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • T9150C
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • G9189A
  • T9204A
  • C9207T
  • G9210A
  • G9216A
    • Deletions
    10409-10411, 10417-10426, 10467-10470, 10487-10494
    Insertions
    ins_10448:G, ins_10458:CTTGAATTATGATTAATTA, ins_10483:GTT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:E638G
  • NS5:T641G
  • NS5:K644E
  • NS5:D676N
  • NS5:V740I
  • NS5:G805K
  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
    • Deletions
    None
    Insertions
    None

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