This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LSZ2.1

Display Name: USA/LOC_000LSZ2.1/2025-07-03
N. Rhoades, L. Batoon, S. Hallis, S. Vo, R. Flores, N. Gurfeild & J. Corrigan

Sample details

Collection date
2025-07-03
Collection date (lower bound)
2025-07-03
Collection date (upper bound)
2025-07-03
Earliest release date
2025-08-26
Collection country
USA
Collection subdivision level 1
California; San Diego County
Isolate name
VV01-25-Q-16726-WNV-M08760-240723

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-29 08:09insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
San Diego County Public Health Lab, San Diego, CA

INSDC

NCBI release date
2025-08-26
NCBI update date
2025-08-28
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10939
Total SNPs
108
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
0
Total frame shifts
0
Completeness
99.17%
Total stop codons
0

Submission details

Submission ID
OZ309012.1
Submitting group
Date submitted
2025-09-29 08:09:55 UTC
Date released
2025-09-29 08:25:25 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • T1965C
  • T2052C
  • A2097C
  • A2136G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • env

  • env:E150D
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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