This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LS6P.1

Display Name: Spain/LOC_000LS6P.1/2024-09-11
C. S. Casimiro-Soriguer, J. Perez-Florido, J. L. Fernandez-Rueda, I. Pedrosa-Corral, V. Guillot-Sulay, N. Lorusso, L. J. Martinez-Gonzalez, J. M. Navarro-Mari, J. Dopazo, S. Sanbonmatsu-Gamez, E. A. Robles, M. Lara, A. Aguado, M. A. Rodriguez Iglesias, J. A. Lepe, F. Garcia, M. Perez-Alegre, E. Andujar, V. E. Jimenez, L. P. Camino, N. Loruso, U. Ameyugo, I. M. Vazquez, C. M. Lozano & J. A. Chaves

Sample details

Collection date
2024-09-11
Collection date (lower bound)
2024-09-11
Collection date (upper bound)
2024-09-11
Earliest release date
2025-08-01
Collection country
Spain
Isolate name
unavailable

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-29 08:09insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

INSDC

NCBI release date
2025-08-01
NCBI update date
2025-08-02
INSDC accession
Bioproject accession
Biosample accession
Raw reads accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
10846
Total SNPs
291
Total inserted nucs
1
Total deleted nucs
1
Total ambiguous nucs
0
Total unknown nucs
4241
Total frame shifts
1
Frame shifts
NS5:592-905(nt:9452-10395)
Completeness
59.89%
Total stop codons
0

Submission details

Submission ID
OZ293489.1
Submitting group
Date submitted
2025-09-29 08:09:55 UTC
Date released
2025-09-29 08:25:25 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T826C
  • T850C
  • T891C
    • Deletions
    9451
    Insertions
    ins_10553:N

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:L158M

    • NS2B

  • NS2B:A93S
  • NS2B:V103A

    • NS4A

  • NS4A:K11N
  • NS4A:A85V

    • NS5

  • NS5:K280R
  • NS5:E496V
  • NS5:L512F

    • env

  • env:V159I
  • env:L167F
    • Deletions
    NS5:591
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue