This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
LOC_000LS1Z.1
Download
Download FASTA
Download metadata TSV
Display Name: France/LOC_000LS1Z.1/2024-09-30
K. Bollore,
A. Mignotte,
G. Lacour,
J. Mocq,
O. Courot,
J. Hanin,
G. Piorkowski,
R. Amaral,
A. Fontaine,
R. Klitting,
X. de Lamballerie &
Y. Simonin
Sample details
Collection date
2024-09-30
Collection date (lower bound)
2024-09-30
Collection date (upper bound)
2024-09-30
Earliest release date
2025-06-12
Collection country
France
Collection subdivision level 1
Occitanie; Herault
Isolate name
WNV-MRV-BVR_MX_consensus
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-29 08:09
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Unite des Virus Emergents, MARSEILLE, Bouches-du-Rhone
INSDC
NCBI release date
2025-06-12
NCBI update date
2025-06-14
INSDC accession
OZ263592.1
Bioproject accession
PRJEB90344
Biosample accession
SAMEA118545088
Host
Host taxon id
7157
Host name scientific
Culicidae
Alignment and QC metrics
Length
8890
Total SNPs
1198
Total inserted nucs
6
Total deleted nucs
3
Total ambiguous nucs
0
Total unknown nucs
3254
Total frame shifts
1
Frame shifts
NS4B:31-33(nt:7006-7014)
Completeness
51.07%
Total stop codons
0
Submission details
Submission ID
OZ263592.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-29 08:09:55 UTC
Date released
2025-09-29 08:25:25 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000LS1Z.1.embl
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
G
261
A
A
267
T
Show more
Deletions
6994-6996
Insertions
ins_7005:GTTGA, ins_7014:G
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
NS1:
I
194
V
NS1:
R
205
G
NS1:
I
236
V
NS1:
V
245
I
NS1:
L
287
I
NS1:
E
289
D
NS1:
T
298
A
NS1:
Y
323
F
NS1:
D
326
E
NS1:
S
327
N
NS1:
Q
338
T
NS1:
Q
349
R
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS3
NS3:
I
597
A
NS3:
A
610
S
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
L
183
M
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
K
190
R
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
E
55
D
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
A
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
env:
I
253
V
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
S
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
NS4B:28-30
Insertions
ins_NS4B:22:TRETTLG
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue